5AJ0

Cryo electron microscopy of actively translating human polysomes (POST state).


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.5 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 5AJ0

Classification: RIBOSOME

Total Structure Weight: 3924116.00


Macromolecule Entities
Molecule Chains Length Organism Details
60S ribosomal protein L8 AA 257 Homo sapiens Gene Name(s): RPL8 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L3 AB 403 Homo sapiens Gene Name(s): RPL3 Gene View OK/SW-cl.32
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L4 AC 427 Homo sapiens Gene Name(s): RPL4 Gene View RPL1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L5 AD 297 Homo sapiens Gene Name(s): RPL5 Gene View MSTP030
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L6 AE 288 Homo sapiens Gene Name(s): RPL6 Gene View TXREB1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L7 AF 248 Homo sapiens Gene Name(s): RPL7 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L7a AG 266 Homo sapiens Gene Name(s): RPL7A Gene View SURF-3 SURF3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L9 AH 192 Homo sapiens Gene Name(s): RPL9 Gene View OK/SW-cl.103 RPL9P7 RPL9P8 RPL9P9
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L10 AI 214 Homo sapiens Gene Name(s): RPL10 Gene View DXS648E QM
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L11 AJ 178 Homo sapiens Gene Name(s): RPL11 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S acidic ribosomal protein P0 AK 317 Homo sapiens Gene Name(s): RPLP0 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L13 AL 211 Homo sapiens Gene Name(s): RPL13 Gene View BBC1 OK/SW-cl.46
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L14 AM 215 Homo sapiens Gene Name(s): RPL14 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L15 AN 204 Homo sapiens Gene Name(s): RPL15 Gene View EC45 TCBAP0781
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L13a AO 203 Homo sapiens Gene Name(s): RPL13A Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L17 AP 184 Homo sapiens Gene Name(s): RPL17 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L18 AQ 188 Homo sapiens Gene Name(s): RPL18 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L19 AR 196 Homo sapiens Gene Name(s): RPL19 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L18a AS 176 Homo sapiens Gene Name(s): RPL18A Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L21 AT 160 Homo sapiens Gene Name(s): RPL21 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L22 AU 128 Homo sapiens Gene Name(s): RPL22 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L23 AV 140 Homo sapiens Gene Name(s): RPL23 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L24 AW 157 Homo sapiens Gene Name(s): RPL24 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L23a AX 156 Homo sapiens Gene Name(s): RPL23A Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L26 AY 145 Homo sapiens Gene Name(s): RPL26 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L27 AZ 136 Homo sapiens Gene Name(s): RPL27 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L27a Aa 148 Homo sapiens Gene Name(s): RPL27A Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L29 Ab 159 Homo sapiens Gene Name(s): RPL29 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L30 Ac 115 Homo sapiens Gene Name(s): RPL30 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L31 Ad 125 Homo sapiens Gene Name(s): RPL31 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L32 Ae 135 Homo sapiens Gene Name(s): RPL32 Gene View PP9932
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L35a Af 110 Homo sapiens Gene Name(s): RPL35A Gene View GIG33
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L34 Ag 117 Homo sapiens Gene Name(s): RPL34 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L35 Ah 123 Homo sapiens Gene Name(s): RPL35 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L36 Ai 105 Homo sapiens Gene Name(s): RPL36 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L37 Aj 97 Homo sapiens Gene Name(s): RPL37 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L38 Ak 70 Homo sapiens Gene Name(s): RPL38 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L39 Al 51 Homo sapiens Gene Name(s): RPL39 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ubiquitin-60S ribosomal protein L40 Am 128 Homo sapiens Gene Name(s): UBA52 Gene View UBCEP2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L41 An 25 Homo sapiens Gene Name(s): RPL41 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L36a Ao 106 Homo sapiens Gene Name(s): RPL36A Gene View RPL44 GIG15 MIG6
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L37a Ap 92 Homo sapiens Gene Name(s): RPL37A Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L12 Aq 165 Homo sapiens Gene Name(s): RPL12 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L28 At 137 Homo sapiens Gene Name(s): RPL28 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L10a Au 217 Homo sapiens Gene Name(s): RPL10A Gene View NEDD6
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein SA BA 295 Homo sapiens Gene Name(s): RPSA Gene View LAMBR LAMR1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S3a BB 264 Homo sapiens Gene Name(s): RPS3A Gene View FTE1 MFTL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S2 BC 293 Homo sapiens Gene Name(s): RPS2 Gene View RPS4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S3 BD 243 Homo sapiens EC#: 4.2.99.18 IUBMB
Gene Name(s): RPS3 Gene View OK/SW-cl.26
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S4, Y isoform 1 BE 263 Homo sapiens Gene Name(s): RPS4Y1 Gene View RPS4Y PRO2646
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S5 BF 204 Homo sapiens Gene Name(s): RPS5 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S6 BG 249 Homo sapiens Gene Name(s): RPS6 Gene View OK/SW-cl.2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S7 BH 194 Homo sapiens Gene Name(s): RPS7 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S8 BI 208 Homo sapiens Gene Name(s): RPS8 Gene View OK/SW-cl.83
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S9 BJ 194 Homo sapiens Gene Name(s): RPS9 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S10 BK 165 Homo sapiens Gene Name(s): RPS10 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S11 BL 158 Homo sapiens Gene Name(s): RPS11 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S12 BM 132 Homo sapiens Gene Name(s): RPS12 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S13 BN 151 Homo sapiens Gene Name(s): RPS13 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S14 BO 151 Homo sapiens Gene Name(s): RPS14 Gene View PRO2640
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S15 BP 145 Homo sapiens Gene Name(s): RPS15 Gene View RIG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S16 BQ 146 Homo sapiens Gene Name(s): RPS16 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S17-like BR 135 Homo sapiens Gene Name(s): RPS17 Gene View RPS17L
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S18 BS 152 Homo sapiens Gene Name(s): RPS18 Gene View D6S218E
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S19 BT 145 Homo sapiens Gene Name(s): RPS19 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S20 BU 119 Homo sapiens Gene Name(s): RPS20 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S21 BV 83 Homo sapiens Gene Name(s): RPS21 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S15a BW 130 Homo sapiens Gene Name(s): RPS15A Gene View OK/SW-cl.82
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S23 BX 143 Homo sapiens Gene Name(s): RPS23 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S24 BY 133 Homo sapiens Gene Name(s): RPS24 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S25 BZ 125 Homo sapiens Gene Name(s): RPS25 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S26 Ba 115 Homo sapiens Gene Name(s): RPS26 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S27 Bb 84 Homo sapiens Gene Name(s): RPS27 Gene View MPS1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S28 Bc 69 Homo sapiens Gene Name(s): RPS28 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S29 Bd 56 Homo sapiens Gene Name(s): RPS29 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S30 Be 59 Homo sapiens Gene Name(s): FAU Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ubiquitin-40S ribosomal protein S27a Bf 156 Homo sapiens Gene Name(s): RPS27A Gene View UBA80 UBCEP1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Guanine nucleotide-binding protein subunit beta-2-like 1 Bg 317 Homo sapiens Gene Name(s): GNB2L1 HLC7 PIG21
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nascent protein chain By 24 Homo sapiens Details: MIXTURE OF ALL ENDOGENOUS PRESENT
Macromolecule Entities
Molecule Chains Length Organism Details
5.8S ribosomal RNA A3 194 Homo sapiens
5S ribosomal RNA A4 121 Homo sapiens
28S ribosomal RNA A2 5029 Homo sapiens
18S ribosomal RNA B1 1869 Homo sapiens
tRNA Bv, Bw 76 Yersinia pseudotuberculosis MIXTURE OF ALL ENDOGENOUS PRESENT
mRNA Bx 28 Homo sapiens MIXTURE OF ALL ENDOGENOUS PRESENT

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

Aj, Ao, Ap, Ba, Bd ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A2, A3, A4, AA, AB, AN, AY, Aa, Ae, An, B1, BD, BX, Bv, Bx MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
UNK
Query on UNK
By L-PEPTIDE LINKING C4 H9 N O2 --

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.5 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2015-02-19
  • Released Date: 2015-05-20
  • Deposition author(s): Behrmann, E., Loerke, J., Budkevich, T.V., Yamamoto, K., Schmidt, A., Penczek, P.A., Vos, M.R., Burger, J., Mielke, T., Scheerer, P., Spahn, C.M.T.

Revision History

  • Version 1_0: 2015-05-20

    Type: Initial release

  • Version 1_1: 2015-05-27

    Type: Other

  • Version 1_2: 2015-07-01

    Type: Database references

  • Version 1_3: 2017-01-11

    Type: Structure summary

  • Version 1_4: 2017-08-23

    Type: Data collection, Derived calculations

  • Version 1_5: 2017-11-08

    Type: Structure summary