5YI3

Structure of Lactococcus lactis ZitR, C30S mutant in complex with DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 5YI3

Classification: METAL BINDING PROTEIN / DNA

Total Structure Weight: 171130.48


Macromolecule Entities
Molecule Chains Length Organism Details
Zinc transport transcriptional regulator A, B, E..., F, I, J, M, NA, B, E, F, I, J, M, N 146 Lactococcus lactis Mutation: C30S
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*TP*GP*TP*TP*AP*AP*CP*TP*AP*GP*TP*TP*AP*AP*CP*A)-3') C, D, G... , H, K, L, O, P C, D, G, H, K, L, O, P 16 Lactococcus lactis

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, E, F, I, J, M, N ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.205
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 89.52 α = 90.00
b = 103.06 β = 94.20
c = 104.86 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-10-01
  • Released Date: 2017-12-06
  • Deposition author(s): Song, Y., Liu, H., Zhu, R., Yi, C., Chen, P.

Revision History

  • Version 1_0: 2017-12-06

    Type: Initial release