5YBB

Structural basis underlying complex assembly andconformational transition of the type I R-M system


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.236

Literature

Macromolecules
Sequence Display for 5YBB

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 338012.03


Macromolecule Entities
Molecule Chains Length Organism Details
Type I restriction-modification system methyltransferase subunit A, B, C, E 507 Caldanaerobacter subterraneus
Restriction endonuclease S subunits D, G 398 Caldanaerobacter subterraneus Gene Name(s): HsdS TTE1545
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA H 22 Synthetic construct
DNA I 22 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAM
Query on SAM

A, B S-ADENOSYLMETHIONINE
C15 H22 N6 O5 S
MEFKEPWMEQBLKI-FCKMPRQPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.236
  • Space Group: P 41

Unit Cell:

Length (Å) Angle (°)
a = 121.60 α = 90.00
b = 121.60 β = 90.00
c = 280.36 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-09-04
  • Released Date: 2017-11-29
  • Deposition author(s): Liu, Y.P., Tang, Q., Zhang, J.Z., Tian, L.F., Gao, P., Yan, X.X.

Revision History

  • Version 1_0: 2017-11-29

    Type: Initial release