5Y87

Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.13 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 5Y87

Classification: RNA

Total Structure Weight: 44952.87

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(P*AP*CP*CP*CP*GP*CP*AP*AP*GP*GP*CP*CP*GP*AP*CP*GP*GP*C)-3') A, C 18 Metagenome
DNA/RNA (50-MER) B, D 50 Metagenome

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A, B, C, D MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.13 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.202
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 91.22 α = 90.00
b = 108.96 β = 90.00
c = 41.79 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-08-19
  • Released Date: 2017-11-22
  • Deposition author(s): Zheng, L., Micura, R.L., Ren, A.

Revision History

  • Version 1_0: 2017-11-22

    Type: Initial release