5XWG

Crystal structure of a novel RNA motif that allows for precise positioning of a metal ion


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 5XWG

Classification: RNA

Total Structure Weight: 5117.67

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(P*CP*GP*CP*UP*(5BU)P*CP*GP*AP*AP*AP*AP*AP*GP*UP*C)-3') A 15 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SR
Query on SR

A STRONTIUM ION
Sr
PWYYWQHXAPXYMF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5BU
Query on 5BU
A RNA LINKING C9 H12 Br N2 O9 P U

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.217
  • Space Group: I 21 3

Unit Cell:

Length (Å) Angle (°)
a = 80.54 α = 90.00
b = 80.54 β = 90.00
c = 80.54 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-06-29
  • Released Date: 2017-10-11
  • Deposition author(s): Kanazawa, H., Kondo, J.

Revision History

  • Version 1_0: 2017-10-11

    Type: Initial release