5XJ2

Structure of spRlmCD with U747 RNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 5XJ2

Classification: TRANSFERASE / RNA

Total Structure Weight: 213155.98


Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized RNA methyltransferase SP_1029 A, B, C, D 454 Streptococcus pneumoniae EC#: 2.1.1 IUBMB
Fragment: UNP residues 1-454
Mutation: E443Q
Gene Name(s): SP_1029
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*GP*GP*CP*AP*CP*GP*UP*GP*CP*U)-3') G 18 Streptococcus pneumoniae

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAH
Query on SAH

A, B, C, D S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.195
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 63.38 α = 90.00
b = 94.92 β = 95.93
c = 164.16 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-04-28
  • Released Date: 2017-11-01
  • Deposition author(s): Jiang, Y., Gong, Q.

Revision History

  • Version 1_0: 2017-11-01

    Type: Initial release