5XC6

Dengue Virus 4 NS3 Helicase in complex with SSRNA SLA12


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 5XC6

Classification: HYDROLASE / RNA

Total Structure Weight: 110503.49


Macromolecule Entities
Molecule Chains Length Organism Details
NS3 Helicase A, B 451 Dengue virus Fragment: UNP residues 1646-2092
Mutation: E250D
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*AP*GP*UP*UP*GP*UP*UP*AP*GP*UP*CP*U)-3') C, D 12 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A, B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.201
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 132.90 α = 90.00
b = 105.41 β = 116.36
c = 72.69 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-03-22
  • Released Date: 2017-11-08
  • Deposition author(s): Swarbrick, C.M.D., Basavannacharya, C., Chan, K.W.K., Chan, S.A., Singh, D., Wei, N., Phoo, W.W., Luo, D., Lescar, J., Vasudevan, S.G.

Revision History

  • Version 1_0: 2017-11-08

    Type: Initial release

  • Version 1_1: 2017-11-22

    Type: Database references