5X45

Crystal structure of 2A protease from Human rhinovirus C15


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.165 
  • R-Value Observed: 0.167 

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This is version 1.3 of the entry. See complete history


Literature

Structural view of the 2A protease from human rhinovirus C15.

Ling, H.Yang, P.Hou, H.Sun, Y.

(2018) Acta Crystallogr F Struct Biol Commun 74: 255-261

  • DOI: https://doi.org/10.1107/S2053230X18003382
  • Primary Citation of Related Structures:  
    5X45

  • PubMed Abstract: 

    The majority of outbreaks of the common cold are caused by rhinoviruses. The 2A protease (2A pro ) of human rhinoviruses (HRVs) is known to play important roles in the propagation of the virus and the modulation of host signal pathways to facilitate viral replication. The 2A pro from human rhinovirus C15 (HRV-C15) has been expressed in Escherichia coli and purified by affinity chromatography, ion-exchange chromatography and gel-filtration chromatography. The crystals diffracted to 2.6 Å resolution. The structure was solved by molecular replacement using the structure of 2A pro from coxsackievirus A16 (CVA16) as the search model. The structure contains a conserved His-Asp-Cys catalytic triad and a Zn 2+ -binding site. Comparison with other 2A pro structures from enteroviruses reveals that the substrate-binding cleft of 2A pro from HRV-C15 exhibits a more open conformation, which presumably favours substrate binding.


  • Organizational Affiliation

    College of Biotechnology, Tianjin University of Science and Technology, Tianjin 300457, People's Republic of China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
protease 2A
A, B, C, D
139Rhinovirus CMutation(s): 0 
UniProt
Find proteins for E5D8F2 (Human rhinovirus C (strain C15))
Explore E5D8F2 
Go to UniProtKB:  E5D8F2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE5D8F2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.165 
  • R-Value Observed: 0.167 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 80.992α = 90
b = 85.37β = 90
c = 208.908γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
SCALEPACKdata reduction
PDB_EXTRACTdata extraction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-02-21
    Type: Initial release
  • Version 1.1: 2018-04-18
    Changes: Data collection, Database references
  • Version 1.2: 2020-01-01
    Changes: Database references
  • Version 1.3: 2024-03-27
    Changes: Data collection, Database references, Refinement description