5WWX

Crystal structure of the KH2 domain of human RNA-binding E3 ubiquitin-protein ligase MEX-3C complex with RNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.170

Literature

Macromolecules
Sequence Display for 5WWX

Classification: RNA BINDING PROTEIN / RNA

Total Structure Weight: 11440.95


Macromolecule Entities
Molecule Chains Length Organism Details
RNA-binding E3 ubiquitin-protein ligase MEX3C A 86 Homo sapiens EC#: 6.3.2 IUBMB
Fragment: KH2 domain, UNP residues 320-396
Gene Name(s): MEX3C Gene View RKHD2 RNF194 BM-013
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(P*AP*GP*AP*GP*U)-3') C 5 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.170
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 74.61 α = 90.00
b = 74.61 β = 90.00
c = 32.53 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-01-05
  • Released Date: 2017-08-23
  • Deposition author(s): Yang, L., Wang, C., Li, F., Gong, Q.

Revision History

  • Version 1_0: 2017-08-23

    Type: Initial release

  • Version 1_1: 2017-08-30

    Type: Refinement description

  • Version 1_2: 2017-10-11

    Type: Database references