5WT3

Pyrococcus abyssi methyltransferase PaTrm5a bound by MTA and cognate tRNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.247

Literature

Macromolecules
Sequence Display for 5WT3

Classification: TRANSFERASE / RNA

Total Structure Weight: 63394.05


Macromolecule Entities
Molecule Chains Length Organism Details
tRNA (guanine(37)-N1)-methyltransferase Trm5a A 333 Pyrococcus abyssi EC#: 2.1.1.228 IUBMB
Gene Name(s): trm5a PYRAB01130 PAB2272
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (73-MER) C 76 Pyrococcus abyssi

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MTA
Query on MTA

A 5'-DEOXY-5'-METHYLTHIOADENOSINE
C11 H15 N5 O3 S
WUUGFSXJNOTRMR-IOSLPCCCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.247
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 58.07 α = 90.00
b = 212.30 β = 90.00
c = 130.04 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2016-12-09
  • Released Date: 2017-12-13
  • Deposition author(s): Xie, W., Wang, C., Jia, Q.

Revision History

  • Version 1_0: 2017-12-13

    Type: Initial release