5WS2

Crystal structure of mpy-RNase J (mutant S247A), an archaeal RNase J from Methanolobus psychrophilus R15, complex with RNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.173

Literature

Macromolecules
Sequence Display for 5WS2

Classification: HYDROLASE

Total Structure Weight: 108657.25


Macromolecule Entities
Molecule Chains Length Organism Details
Ribonuclease J A, B 470 Methanolobus psychrophilus EC#: 3.1 IUBMB
Mutation: S247A
Gene Name(s): rnj Mpsy_0886
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(P*AP*AP*AP*AP*A)-3') C, D 5 Unidentified

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.173
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 168.61 α = 90.00
b = 168.61 β = 90.00
c = 165.87 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2016-12-05
  • Released Date: 2017-12-06
  • Deposition author(s): Li, D.F., Feng, N.

Revision History

  • Version 1_0: 2017-12-06

    Type: Initial release