5WCM

Crystal structure of the complex between class B3 beta-lactamase BJP-1 and 4-nitrobenzene-sulfonamide - new refinement


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.160
  • R-Value Work: 0.132

Literature

Macromolecules
Sequence Display for 5WCM

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 58559.50

Macromolecule Entities
Molecule Chains Length Organism Details
Blr6230 protein A, B 263 Bradyrhizobium diazoefficiens Fragment: residues 32-294
Gene Name(s): blr6230
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
4NZ
Query on 4NZ

A, B 4-nitrobenzenesulfonamide
C6 H6 N2 O4 S
QWKKYJLAUWFPDB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.160
  • R-Value Work: 0.132
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 42.35 α = 79.34
b = 44.91 β = 90.59
c = 76.64 γ = 61.68

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-06-30
  • Released Date: 2017-07-19
  • Deposition author(s): Docquier, J.D., Benvenuti, M., Calderone, V., Menciassi, N., Shabalin, I.G., Raczynska, J.E., Wlodawer, A., Jaskolski, M., Minor, W., Mangani, S.
  • This entry supercedes: 3M8T

Revision History

  • Version 1_0: 2017-07-19

    Type: Initial release