5W9S

Zinc finger of human CXXC5 in complex with CpG DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 5W9S

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 15889.46


Macromolecule Entities
Molecule Chains Length Organism Details
CXXC-type zinc finger protein 5 C 71 Homo sapiens Fragment: Zinc finger domain (UNP residues 254-306)
Gene Name(s): CXXC5 Gene View HSPC195 TCCCIA00297
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
CpG DNA fragment A, B 12 Synthetic construct

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

C ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UNX
Query on UNX

C UNKNOWN ATOM OR ION
X
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 40.11 α = 90.00
b = 40.11 β = 90.00
c = 81.20 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-06-23
  • Released Date: 2017-10-18
  • Deposition author(s): Liu, K., Xu, C., Tempel, W., Walker, J.R., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

Revision History

  • Version 1_0: 2017-10-18

    Type: Initial release