5W9Q

Zinc finger region of MBD1 in complex with CpG DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 5W9Q

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 28921.89


Macromolecule Entities
Molecule Chains Length Organism Details
Methyl-CpG-binding domain protein 1 A, B 60 Homo sapiens Fragment: Zinc finger region (UNP residues 330-388)
Gene Name(s): MBD1 Gene View CXXC3 PCM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
dna C, D, E, F 12 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UNX
Query on UNX

A, B, C, D UNKNOWN ATOM OR ION
X
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 139.34 α = 90.00
b = 27.80 β = 106.52
c = 64.91 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-06-23
  • Released Date: 2017-10-18
  • Deposition author(s): Liu, K., Xu, C., Tempel, W., Walker, J.R., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

Revision History

  • Version 1_0: 2017-10-18

    Type: Initial release