5W7N

2-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 5W7N

Classification: HYDROLASE / DNA / RNA

Total Structure Weight: 19117.15


Macromolecule Entities
Molecule Chains Length Organism Details
Ribonuclease H A 132 Bacillus halodurans EC#: 3.1.26.4 IUBMB
Fragment: residues 62-193
Mutation: D132N
Gene Name(s): rnhA BH0863
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') B 6 Synthetic construct
DNA (5'-D(*AP*(US3)P*GP*(US3)P*CP*G)-3') C 6 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
US3
Query on US3
C DNA LINKING C10 H15 N2 O7 P Se DT

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.192
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 80.69 α = 90.00
b = 37.69 β = 95.95
c = 62.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-06-20
  • Released Date: 2017-06-28
  • Deposition author(s): Fang, Z., Yang, F., Huang, Z.

Revision History

No revisions since initial release