5W0B

Structure of human TUT7 catalytic module (CM)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.61 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.230

Literature

Macromolecules
Sequence Display for 5W0B

Classification: TRANSFERASE

Total Structure Weight: 135284.00

Macromolecule Entities
Molecule Chains Length Organism Details
Terminal uridylyltransferase 7 A, B, C 389 Homo sapiens EC#: 2.7.7.52 IUBMB
Fragment: nucleotidyltransferase domain (UNP residues 983-1365)
Mutation: D1060A
Gene Name(s): ZCCHC6 Gene View HS2 KIAA1711 TUT7
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

B, C IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.61 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.230
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 141.23 α = 90.00
b = 141.23 β = 90.00
c = 174.48 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-05-30
  • Released Date: 2017-06-28
  • Deposition author(s): Faehnle, C.R., Walleshauser, J., Joshua-Tor, L.

Revision History

  • 2017-07-19
    Type: Database references
  • 2017-08-16
    Type: Database references
  • 2017-09-13
    Type: Author supporting evidence