5VXQ

X-Ray crystallography structure of the parallel stranded duplex formed by 5-rA5-dA-rA5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.0 Å
  • R-Value Free: 0.160
  • R-Value Work: 0.128

Literature

Macromolecules
Sequence Display for 5VXQ

Classification: RNA DNA

Total Structure Weight: 7445.30

Macromolecule Entities
Molecule Chains Length Organism Details
DNA/RNA (5'-R(*AP*AP*AP*AP*A)-D(P*A)-R(P*AP*AP*AP*AP*A)-3') A, B 11 Synthetic construct modified RNA duplex

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NH4
Query on NH4

A, B AMMONIUM ION
H4 N
QGZKDVFQNNGYKY-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.0 Å
  • R-Value Free: 0.160
  • R-Value Work: 0.128
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 22.80 α = 90.00
b = 22.80 β = 90.00
c = 164.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-05-23
  • Released Date: 2017-08-16
  • Deposition author(s): Xie, J., Chen, Y., Wei, X., Kozlov, G., Gehring, K.

Revision History

  • Version 1_0: 2017-08-16

    Type: Initial release

  • Version 1_1: 2017-08-23

    Type: Database references

  • Version 1_2: 2017-10-11

    Type: Database references