5VW1

Crystal structure of SpyCas9-sgRNA-AcrIIA4 ternary complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 5VW1

Classification: HYDROLASE

Total Structure Weight: 197146.48


Macromolecule Entities
Molecule Chains Length Organism Details
CRISPR-associated endonuclease Cas9/Csn1 A 1370 Streptococcus pyogenes EC#: 3.1 IUBMB
Mutation: D10A, H840A
Gene Name(s): cas9 csn1 SPy_1046
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
anti-CRISPR protein AcrIIA4 B 89 Listeria monocytogenes Mutation: S4N, E5D, A16T, R18K, E20S, D24S, K29Q, D33R, D35N, K47E, A52V, A56I, T58A, K65Q, S79T, I81T
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
sgRNA C 85 Listeria monocytogenes

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PG4
Query on PG4

A, C TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.178
  • Space Group: P 2 21 21

Unit Cell:

Length (Å) Angle (°)
a = 72.19 α = 90.00
b = 101.24 β = 90.00
c = 303.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-05-21
  • Released Date: 2017-06-28
  • Deposition author(s): Yang, H., Patel, D.J.

Revision History

  • 2017-07-19
    Type: Database references