5VVL

Cas1-Cas2 bound to full-site mimic with Ni


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.31 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.224

Literature

Macromolecules
Sequence Display for 5VVL

Classification: HYDROLASE / DNA

Total Structure Weight: 201218.14


Macromolecule Entities
Molecule Chains Length Organism Details
CRISPR-associated endonuclease Cas1 A, B, C, D 308 Escherichia coli EC#: 3.1 IUBMB
Gene Name(s): ygbT cas1 b2755 JW2725
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CRISPR-associated endoribonuclease Cas2 E, F 103 Escherichia coli EC#: 3.1 IUBMB
Gene Name(s): ygbF cas2 b2754 JW5438
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (11-MER) G 11 Synthetic construct
DNA (11-MER) H 11 Synthetic construct
DNA (58-MER) J 58 Synthetic construct
DNA (58-MER) K 58 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NI
Query on NI

A, B, C, D, E, G, J, K NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.31 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.224
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 74.64 α = 90.00
b = 197.73 β = 111.35
c = 88.79 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-05-19
  • Released Date: 2017-08-02
  • Deposition author(s): Wright, A.V., Knott, G.J., Doxzen, K.D., Doudna, J.A.

Revision History

  • Version 1_0: 2017-08-02

    Type: Initial release

  • Version 1_1: 2017-09-27

    Type: Database references