5VSV

Crystal Structure of Inosine 5'-monophosphate Dehydrogenase from Clostridium perfringens Complexed with IMP and P225


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 5VSV

Classification: oxidoreductase / oxidoreductase inhibitor

Total Structure Weight: 156769.38

Macromolecule Entities
Molecule Chains Length Organism Details
Inosine-5'-monophosphate dehydrogenase A, B, C, D 363 Clostridium perfringens EC#: 1.1.1.205 IUBMB
Gene Name(s): guaB_2 guaB ERS852446_02285 JFP838_13815
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
8KY
Query on 8KY

A, B, C {2-chloro-5-[({2-[3-(prop-1-en-2-yl)phenyl]propan- 2-yl}carbamoyl)amino]phenoxy}acetic acid
C21 H23 Cl N2 O4
NIAYZIDQFFFUTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IMP
Query on IMP

A, B, C, D INOSINIC ACID
C10 H13 N4 O8 P
GRSZFWQUAKGDAV-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.198
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 62.86 α = 110.83
b = 77.64 β = 104.05
c = 78.97 γ = 105.44

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-05-12
  • Released Date: 2017-05-24
  • Deposition author(s): Maltseva, N., Kim, Y., Mulligan, R., Makowska-Grzyska, M., Gu, M., Gollapalli, D.R., Hedstrom, L., Joachimiak, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
  • This entry supercedes: 5UZO

Revision History

  • Version 1_0: 2017-05-24

    Type: Initial release

  • Version 1_1: 2017-09-20

    Type: Author supporting evidence