5VQC

Crystal structure of rifampin monooxygenase from Streptomyces venezuelae, complex with rifampin and FAD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.32 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 5VQC

Classification: OXIDOREDUCTASE

Total Structure Weight: 162615.23

Macromolecule Entities
Molecule Chains Length Organism Details
Rifampin monooxygenase A, B, C 476 Streptomyces venezuelae Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RFP
Query on RFP

A, B, C RIFAMPICIN
C43 H58 N4 O12
JQXXHWHPUNPDRT-WLSIYKJHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FAD
Query on FAD

A, B, C FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B, C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.32 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.176
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 202.03 α = 90.00
b = 129.40 β = 105.45
c = 74.34 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-05-08
  • Released Date: 2017-08-23
  • Deposition author(s): Cox, G., Kelso, J., Stogios, P.J., Savchenko, A., Anderson, W.F., Wright, G.D., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2017-08-23

    Type: Initial release

  • Version 1_1: 2017-09-06

    Type: Source and taxonomy

  • Version 1_2: 2017-09-27

    Type: Author supporting evidence