5VJL

Crystal structure of H7 hemagglutinin mutant (V186K, K193T, G228S) from the influenza virus A/Shanghai/2/2013 (H7N9) with LSTc


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.218

Literature

Macromolecules
Sequence Display for 5VJL

Classification: VIRAL PROTEIN

Total Structure Weight: 57452.04

Macromolecule Entities
Molecule Chains Length Organism Details
Hemagglutinin HA1 A 325 Influenza a virus Mutation: V186K, K193T, G228S
Gene Name(s): HA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Hemagglutinin HA2 B 183 Influenza a virus Gene Name(s): HA

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SIA
Query on SIA

A O-SIALIC ACID
C11 H19 N O9
SQVRNKJHWKZAKO-YRMXFSIDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MOH
Query on MOH

A METHANOL
C H4 O
OKKJLVBELUTLKV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.218
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 116.38 α = 90.00
b = 116.38 β = 90.00
c = 296.01 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-04-19
  • Released Date: 2017-05-24
  • Deposition author(s): Zhu, X., Wilson, I.A.

Revision History

  • Version 1_0: 2017-05-24

    Type: Initial release

  • Version 1_1: 2017-05-31

    Type: Data collection

  • Version 1_2: 2017-06-28

    Type: Database references