5VJK

Crystal structure of H7 hemagglutinin mutant (V186K, K193T, G228S) from the influenza virus A/Shanghai/2/2013 (H7N9)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.203

Literature

Macromolecules
Sequence Display for 5VJK

Classification: VIRAL PROTEIN

Total Structure Weight: 57512.09

Macromolecule Entities
Molecule Chains Length Organism Details
Hemagglutinin HA1 A 325 Influenza a virus Mutation: V186K, K193T, G228S
Gene Name(s): HA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Hemagglutinin HA2 B 183 Influenza a virus Gene Name(s): HA

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

B BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.203
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 115.44 α = 90.00
b = 115.44 β = 90.00
c = 294.87 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-04-19
  • Released Date: 2017-05-24
  • Deposition author(s): Zhu, X., Wilson, I.A.

Revision History

  • Version 1_0: 2017-05-24

    Type: Initial release

  • Version 1_1: 2017-05-31

    Type: Data collection

  • Version 1_2: 2017-06-28

    Type: Database references