5VDB

Crystal structure of a GNAT superfamily acetyltransferase PA4794 in complex with bisubstrate analog 3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.170
  • R-Value Work: 0.145

Literature

Macromolecules
Sequence Display for 5VDB

Classification: transferase / transferase inhibitor

Total Structure Weight: 19608.79

Macromolecule Entities
Molecule Chains Length Organism Details
acetyltransferase PA4794 A 161 Pseudomonas aeruginosa Gene Name(s): PA4794
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
93M
Query on 93M

A (3R,5S,9R,26S)-1-[(2R,3S,4R,5R)-5-(6-amino- 9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran- 2-yl]-3,5,9-trihydroxy-8,8-dimethyl-10,14,20- trioxo-26-({[(phenylacetyl)amino]acetyl}amino)- 2,4,6-trioxa-18-thia-11,15,21-triaza-3,5- diphosphaheptacosan-27-oic acid 3,5-dioxide (non- preferred name)
C39 H59 N10 O21 P3 S
UWVFJLUZBIMSSQ-RYFVFCQRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.170
  • R-Value Work: 0.145
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 57.33 α = 90.00
b = 76.12 β = 90.00
c = 39.15 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-04-01
  • Released Date: 2017-07-26
  • Deposition author(s): Majorek, K.A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2017-08-23
    Type: Database references