5VC9

Zinc finger of human CXXC4 in complex with CpG DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 5VC9

Classification: DNA BINDING PROTEIN

Total Structure Weight: 26139.11


Macromolecule Entities
Molecule Chains Length Organism Details
CXXC-type zinc finger protein 4 C, F 49 Homo sapiens Gene Name(s): CXXC4 Gene View IDAX
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
CpG DNA A, B, D, E 12 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

C, F ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UNX
Query on UNX

A, D, E, F UNKNOWN ATOM OR ION
X
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 29.98 α = 70.98
b = 40.29 β = 86.43
c = 57.76 γ = 67.83

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-03-31
  • Released Date: 2017-06-28
  • Deposition author(s): Liu, K., Xu, C., Tempel, W., Walker, J.R., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

Revision History

No revisions since initial release