5VAO

Crystal structure of eVP30 C-terminus and eNP peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.183

Literature

Macromolecules
Sequence Display for 5VAO

Classification: VIRAL PROTEIN

Total Structure Weight: 64267.84

Macromolecule Entities
Molecule Chains Length Organism Details
Minor nucleoprotein VP30 A, B, C, D 129 Zaire ebolavirus Fragment: UNP residues 139-267
Gene Name(s): VP30
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
NP E, F, G, H 11 Zaire ebolavirus Fragment: UNP residues 601-611
Gene Name(s): NP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEG
Query on PEG

B, C, D, E DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B, C, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

D CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B, C, D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.183
  • Space Group: I 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 139.48 α = 90.00
b = 139.48 β = 90.00
c = 161.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-03-27
  • Released Date: 2017-06-21
  • Deposition author(s): XU, W., Leung, D.W., Amarasinghe, G.K.

Revision History

  • Version 1_0: 2017-06-21

    Type: Initial release