5VA0

Glucocorticoid Receptor DNA Binding Domain in complex with AP-1 response element from VCAM-1 Promoter


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.197

Literature

Macromolecules
Sequence Display for 5VA0

Classification: transcription / dna

Total Structure Weight: 26153.98


Macromolecule Entities
Molecule Chains Length Organism Details
Glucocorticoid receptor A, B 72 Homo sapiens Fragment: unp residues 84-155
Gene Name(s): NR3C1 Gene View GRL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*GP*CP*TP*GP*AP*CP*TP*CP*AP*TP*CP*AP*AP*G)-3') C 16 Homo sapiens
DNA (5'-D(*CP*TP*TP*GP*AP*TP*GP*AP*GP*TP*CP*AP*GP*CP*CP*G)-3') D 16 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.197
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 39.44 α = 90.00
b = 96.28 β = 90.00
c = 105.22 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-03-24
  • Released Date: 2017-08-09
  • Deposition author(s): Weikum, E.R., Ortlund, E.A.

Revision History

  • Version 1_0: 2017-08-09

    Type: Initial release

  • Version 1_1: 2017-08-16

    Type: Database references, Refinement description

  • Version 1_2: 2017-09-13

    Type: Database references