5V9X

Structure of Mycobacterium smegmatis helicase Lhr bound to ssDNA and AMP-PNP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 5V9X

Classification: HYDROLASE / DNA

Total Structure Weight: 101000.99


Macromolecule Entities
Molecule Chains Length Organism Details
ATP-dependent DNA helicase A 877 Mycobacterium smegmatis EC#: 3.6.4.13 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
ssDNA B 16 Unidentified

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

B DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.195
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 149.46 α = 90.00
b = 88.13 β = 109.10
c = 83.68 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-03-23
  • Released Date: 2017-12-06
  • Deposition author(s): Ordonez, H., Jacewicz, A., Ferrao, R., Shuman, S.

Revision History

  • Version 1_0: 2017-12-06

    Type: Initial release