5V86

Structure of DCN1 bound to NAcM-OPT


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.37 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.155

Literature

Macromolecules
Sequence Display for 5V86

Classification: HYDROLASE

Total Structure Weight: 44611.63

Macromolecule Entities
Molecule Chains Length Organism Details
Lysozyme,DCN1-like protein 1 A 384 Homo sapiens Enterobacteria phage t4 sensu lato EC#: 3.2.1.17 IUBMB
Fragment: residues 62-259
Mutation: C54T, C97A, D127A, A146T, R154A
Gene Name(s): E DCUN1D1 Gene View DCUN1L1 RP42 SCCRO
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
8ZA
Query on 8ZA

A N-benzyl-N-(1-butylpiperidin-4-yl)-N'-(3,4- dichlorophenyl)urea
C23 H29 Cl2 N3 O
VPHJABWIKCBGMC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.37 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.155
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 35.04 α = 90.00
b = 96.85 β = 105.83
c = 59.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-03-21
  • Released Date: 2017-05-24
  • Deposition author(s): Guy, R.K., Schulman, B.A., Scott, D.C., Hammill, J.T.

Revision History

  • Version 1_0: 2017-05-24

    Type: Initial release

  • Version 1_1: 2017-06-21

    Type: Database references, Refinement description

  • Version 1_2: 2017-09-06

    Type: Database references

  • Version 1_3: 2017-09-20

    Type: Author supporting evidence