5V2H

RNA octamer containing glycol nucleic acid, SgnT


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.08 Å
  • R-Value Free: 0.157
  • R-Value Work: 0.136

Literature

Macromolecules
Sequence Display for 5V2H

Classification: RNA

Total Structure Weight: 10431.21

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*(CBV)P*GP*AP*AP*(ZTH)P*UP*CP*G)-3') A, B, C, D 8 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NCO
Query on NCO

B COBALT HEXAMMINE(III)
Co H18 N6
DYLMFCCYOUSRTK-FGTKAUEHAT
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
CBV
Query on CBV
A, B, C, D RNA LINKING C9 H13 Br N3 O8 P C
ZTH
Query on ZTH
A, B, C, D RNA LINKING C8 H13 N2 O7 P T

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.08 Å
  • R-Value Free: 0.157
  • R-Value Work: 0.136
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 79.03 α = 90.00
b = 31.90 β = 90.46
c = 33.78 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-03-04
  • Released Date: 2017-06-14
  • Deposition author(s): Harp, J.M., Egli, M.

Revision History

No revisions since initial release