5V1L

Structure of S-GNA dodecamer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.153
  • R-Value Work: 0.133

Literature

Macromolecules
Sequence Display for 5V1L

Classification: RNA

Total Structure Weight: 16132.70

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*CP*GP*CP*GP*AP*AP*UP*(ZTH)P*AP*GP*CP*G)-3') A, B, C, D 12 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SPM
Query on SPM

B SPERMINE
C10 H26 N4
PFNFFQXMRSDOHW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SR
Query on SR

A, B, C, D STRONTIUM ION
Sr
PWYYWQHXAPXYMF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
ZTH
Query on ZTH
A, B, C, D RNA LINKING C8 H13 N2 O7 P T

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.153
  • R-Value Work: 0.133
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 34.95 α = 90.00
b = 46.24 β = 100.09
c = 82.93 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-03-02
  • Released Date: 2017-06-14
  • Deposition author(s): Pallan, P.S., Egli, M.

Revision History

No revisions since initial release