5V0V

Crystal structure of Equine Serum Albumin complex with etodolac


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 5V0V

Classification: TRANSPORT PROTEIN

Total Structure Weight: 68078.52

Macromolecule Entities
Molecule Chains Length Organism Details
Serum albumin A 583 Equus caballus Fragment: UNP residues 25-607
Mutation: R560A
Gene Name(s): ALB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
8QP
Query on 8QP

A [(1S)-1,8-diethyl-1,3,4,9-tetrahydropyrano[3,4- b]indol-1-yl]acetic acid
(S)-Etodolac (Synonym)
C17 H21 N O3
NNYBQONXHNTVIJ-KRWDZBQOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
8QS
Query on 8QS

A [(1R)-1,8-diethyl-1,3,4,9-tetrahydropyrano[3,4- b]indol-1-yl]acetic acid
(R)-Etodolac (Synonym)
C17 H21 N O3
NNYBQONXHNTVIJ-QGZVFWFLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TRS
Query on TRS

A 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 94.21 α = 90.00
b = 94.21 β = 90.00
c = 141.82 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-02-28
  • Released Date: 2017-03-15
  • Deposition author(s): Czub, M.P., Shabalin, I.G., Handing, K.B., Venkataramany, B.S., Steen, E.H., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2017-03-15

    Type: Initial release

  • Version 1_1: 2017-09-13

    Type: Author supporting evidence