5V0H

RNA duplex with 2-MeImpG analogue bound-one binding site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.227

Literature

Macromolecules
Sequence Display for 5V0H

Classification: RNA

Total Structure Weight: 10619.25

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') A, B 15 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
8OS
Query on 8OS

A 5'-O-[(S)-hydroxy(4-methyl-1H-imidazol-5- yl)phosphoryl]guanosine
C14 H18 N7 O7 P
MUFMHNGPMISZRD-HTVVRFAVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
LCC
Query on LCC
A, B RNA LINKING C11 H16 N3 O8 P --
LCG
Query on LCG
A, B RNA LINKING C11 H14 N5 O8 P DG

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.227
  • Space Group: P 3 2 1

Unit Cell:

Length (Å) Angle (°)
a = 42.85 α = 90.00
b = 42.85 β = 90.00
c = 83.84 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-02-28
  • Released Date: 2017-03-08
  • Deposition author(s): Zhang, W., Tam, C.P., Szostak, J.W.

Revision History

  • 2017-03-29
    Type: Data collection