5V01

Crystal structure of the competence damage-inducible protein A (ComA) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Structural Biology Knowledgebase: 5V01 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.161
  • R-Value Work: 0.124

Literature

Macromolecules
Sequence Display for 5V01

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 36807.90

Macromolecule Entities
Molecule Chains Length Organism Details
Competence damage-inducible protein A A, B 173 Klebsiella pneumoniae Gene Name(s): ydeJ KPN_01597
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CSO
Query on CSO

B S-HYDROXYCYSTEINE
C3 H7 N O3 S
FXIRVRPOOYSARH-REOHCLBHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 38.45 α = 90.00
b = 90.43 β = 103.75
c = 44.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-02-28
  • Released Date: 2017-03-15
  • Deposition author(s): Borek, D., Wawrzak, Z., Grimshaw, S., Sandoval, J., Evdokimova, E., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

No revisions since initial release