5UX0

X-ray crystal structure of Marinitoga piezophila Argonaute in complex with 5' OH guide RNA and target DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.215

Literature

Macromolecules
Sequence Display for 5UX0

Classification: HYDROLASE / RNA / DNA

Total Structure Weight: 178564.88


Macromolecule Entities
Molecule Chains Length Organism Details
Argonaute protein A, D 642 Marinitoga piezophila Mutation: D516A
Gene Name(s): Marpi_0405
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*G*GP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*AP*U)-3') B, E 21 Synthetic construct
DNA (5'-D(P*AP*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*CP*C)-3') C, F 21 Synthetic construct


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.215
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 85.00 α = 90.00
b = 130.99 β = 90.00
c = 171.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-02-21
  • Released Date: 2017-05-03
  • Deposition author(s): Doxzen, K.W., Doudna, J.A.

Revision History

  • Version 1_0: 2017-05-03

    Type: Initial release

  • Version 1_1: 2017-06-07

    Type: Database references