5USC

Crystal structure of prephenate dehydrogenase tyrA from Bacillus anthracis in complex with NAD and L-tyrosine

Structural Biology Knowledgebase: 5USC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 5USC

Classification: HYDROLASE

Total Structure Weight: 86441.35

Macromolecule Entities
Molecule Chains Length Organism Details
Prephenate dehydrogenase A, B 381 Bacillus anthracis EC#: 1.3.1.12 IUBMB
Details: The protein was treated with 1/50 v/v of 2 mg/ml chymotrypsin prior to crystallization. Probably, some of the N-terminal residues are missing in the structure due to limited proteolysis.
Gene Name(s): tyrA GBAA_2954 BASH2_02940
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

B NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TYR
Query on TYR

A TYROSINE
C9 H11 N O3
OUYCCCASQSFEME-QMMMGPOBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 106.86 α = 90.00
b = 81.00 β = 90.00
c = 83.57 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-02-13
  • Released Date: 2017-03-08
  • Deposition author(s): Shabalin, I.G., Hou, J., Kutner, J., Grimshaw, S., Christendat, D., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

No revisions since initial release