5UPR

X-ray structure of a putative triosephosphate isomerase from Toxoplasma gondii ME49


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.166

Literature

Macromolecules
Sequence Display for 5UPR

Classification: ISOMERASE

Total Structure Weight: 114220.51

Macromolecule Entities
Molecule Chains Length Organism Details
Triosephosphate isomerase A, B, C, D 265 Toxoplasma gondii EC#: 5.3.1.1 IUBMB
Fragment: UNP residues 111-375
Gene Name(s): TPI-II TGME49_233500
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B, C, D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.166
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 56.37 α = 90.00
b = 115.53 β = 90.02
c = 78.72 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-02-03
  • Released Date: 2017-02-22
  • Deposition author(s): Filippova, E.V., Wawrzak, Z., Minasov, G., Cardona-Correa, A., Bishop, B., Anderson, W.F., Ngo, H., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2017-02-22

    Type: Initial release

  • Version 1_1: 2017-07-19

    Type: Database references, Structure summary