5UM7

Crystal structure of the reduced state of the thiol-disulfide reductase SdbA from Streptococcus gordonii


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.238

Literature

Macromolecules
Sequence Display for 5UM7

Classification: OXIDOREDUCTASE

Total Structure Weight: 43969.18

Macromolecule Entities
Molecule Chains Length Organism Details
Thioredoxin signature protein A, B 187 Streptococcus gordonii Gene Name(s): SGO_2006
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 49.25 α = 90.00
b = 49.32 β = 90.00
c = 196.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-01-26
  • Released Date: 2017-02-15
  • Deposition author(s): Stogios, P.J., Evdokimova, E., Wawrzak, Z., Yim, V., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2017-02-15

    Type: Initial release

  • Version 1_1: 2017-09-27

    Type: Author supporting evidence