Crystal structure of Escherichia coli Hfq DNA complex reveals multifunctional nucleic acid binding site
Orans, J., Kovach, A.R., Hoff, K.E., Brennan, R.G.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
RNA-binding protein Hfq | 68 | Escherichia coli | Mutation(s): 0  Gene Names: hfq, A6I92_23385, AWG90_11910, HMPREF3040_03060 | ||
UniProt | |||||
Find proteins for P0A6X3 (Escherichia coli (strain K12)) Explore P0A6X3  Go to UniProtKB:  P0A6X3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A6X3 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*CP*GP*GP*CP*AP*AP*AP*AP*AP*AP*CP*GP*GP*CP*AP*AP*AP*AP*AP*A)-3') | M [auth N], P [auth Z] | 20 | Escherichia coli | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*TP*TP*TP*TP*TP*TP*GP*CP*CP*GP*TP*TP*TP*TP*TP*TP*GP*CP*CP*G)-3') | N [auth M], O [auth Y] | 20 | Escherichia coli | ||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | AA [auth K] BA [auth L] Q [auth A] R [auth B] S [auth C] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 65.749 | α = 105.93 |
b = 65.795 | β = 92.28 |
c = 81.996 | γ = 119.92 |
Software Name | Purpose |
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HKL-2000 | data scaling |
PHENIX | refinement |
CNS | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data reduction |
PHASER | phasing |
HKL | data scaling |