5UJ2

Crystal structure of HCV NS5B genotype 2A JFH-1 isolate with S15G E86Q E87Q C223H V321I mutations and Delta8 neta hairpoin loop deletion in complex with GS-639476 (diphsohate version of GS-9813), Mn2+ and symmetrical primer template 5'-AUAAAUUU


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.184

Literature

Macromolecules
Sequence Display for 5UJ2

Classification: immune system / RNA

Total Structure Weight: 69497.88


Macromolecule Entities
Molecule Chains Length Organism Details
Genome polyprotein A 572 Hepatitis c virus Mutation: S15G, E86Q, E87Q, C223H, V321I, ΔN2886, ΔF2887, ΔE2888, ΔM2889, ΔY2890, ΔG2891, ΔS2892, ΔV2893, S445G
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*AP*UP*AP*AP*AP*UP*UP*U)-3') P, T 8 Escherichia coli

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
8B4
Query on 8B4

P (1S)-1-(4-aminoimidazo[2,1-f][1,2,4]triazin- 7-yl)-1,4-anhydro-2-deoxy-2-fluoro-5-O-[(S)- hydroxy(phosphonooxy)phosphoryl]-2-methyl- D-ribitol
C11 H16 F N5 O9 P2
ITUZUOFEWXEZBP-HGIWHZBTSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, P MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.184
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 141.76 α = 90.00
b = 141.76 β = 90.00
c = 91.11 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-01-16
  • Released Date: 2017-03-22
  • Deposition author(s): Edwards, T.E., Fox III, D., Appleby, T.C., Murakami, E., Rey, A., McGrath, M.E.

Revision History

  • 2017-04-12
    Type: Database references