5UEE

RNA primer-template complex with guanosine dinucleotide ligand G(5')ppp(5')G


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.232

Literature

Macromolecules
Sequence Display for 5UEE

Classification: RNA

Total Structure Weight: 10724.23

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') A, B 14 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GP3
Query on GP3

A, B DIGUANOSINE-5'-TRIPHOSPHATE
C20 H27 N10 O18 P3
AAXYAFFKOSNMEB-MHARETSRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
LCC
Query on LCC
A, B RNA LINKING C11 H16 N3 O8 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.232
  • Space Group: P 3 2 1

Unit Cell:

Length (Å) Angle (°)
a = 46.96 α = 90.00
b = 46.96 β = 90.00
c = 83.10 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-01-01
  • Released Date: 2017-07-05
  • Deposition author(s): Zhang, W., Tam, C.P., Szostak, J.W.

Revision History

  • Version 1_0: 2017-07-05

    Type: Initial release

  • Version 1_1: 2017-07-19

    Type: Database references

  • Version 1_2: 2017-08-02

    Type: Database references