5UED

RNA primer-template complex with guanosine dinucleotide ligand G(5')pp(5')G


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.210

Literature

Macromolecules
Sequence Display for 5UED

Classification: RNA

Total Structure Weight: 10418.44

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') A, B 14 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
86S
Query on 86S

A, B [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6- oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan- 2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})- 5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9- yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate
C20 H26 N10 O15 P2
LFEYGVXBDRXHGF-MHARETSRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
LCC
Query on LCC
A, B RNA LINKING C11 H16 N3 O8 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.210
  • Space Group: P 3 2 1

Unit Cell:

Length (Å) Angle (°)
a = 43.91 α = 90.00
b = 43.91 β = 90.00
c = 85.41 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-01-01
  • Released Date: 2017-07-05
  • Deposition author(s): Zhang, W., Tam, C.P., Szostak, J.W.

Revision History

  • 2017-07-19
    Type: Database references