5UDZ

Human LIN28A in complex with let-7f-1 microRNA pre-element

Structural Biology Knowledgebase: 5UDZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 5UDZ

Classification: RNA Binding Protein / RNA

Total Structure Weight: 48454.36


Macromolecule Entities
Molecule Chains Length Organism Details
Protein lin-28 homolog A A, B 148 Homo sapiens Fragment: UNP residues 31-187
Mutation: ΔK127, ΔS128, ΔM129, ΔQ130, ΔK131, ΔR132, ΔR133, ΔS134, ΔK135
Gene Name(s): LIN28A Gene View CSDD1 LIN28 ZCCHC1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
let-7f-1 pre-element V, W 25 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.164
  • Space Group: P 41

Unit Cell:

Length (Å) Angle (°)
a = 76.43 α = 90.00
b = 76.43 β = 90.00
c = 105.61 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-12-29
  • Released Date: 2017-03-22
  • Deposition author(s): Nam, Y., Wang, L., Sliz, P.

Revision History

  • 2017-03-29
    Type: Citation | Details: Citation