5U8G

DNA Polymerase Beta crystallized in PEG 400

Structural Biology Knowledgebase: 5U8G SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 5U8G

Classification: TRANSFERASE LYASE / DNA

Total Structure Weight: 47773.30


Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase beta A 335 Homo sapiens EC#: 2.7.7.7 IUBMB 4.2.99 IUBMB
Fragment: DNA polymerase
Gene Name(s): POLB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') T 16 Unidentified DNA Template Strand
DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3') P 10 Unidentified DNA Primer Strand
DNA (5'-D(*GP*TP*CP*GP*G)-3') D 5 Unidentified DNA Downstream Strand

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.179
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 54.10 α = 90.00
b = 78.66 β = 104.25
c = 54.72 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-12-14
  • Released Date: 2017-04-26
  • Deposition author(s): Eckenroth, B.E., Doublie, S.

Revision History

  • 2017-05-17
    Type: Citation | Details: Citation