5U1J

Structure of pNOB8 ParA bound to nonspecific DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.220

Literature

Macromolecules
Sequence Display for 5U1J

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 162985.16


Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized protein A, B, C, D 322 Sulfolobus sp. nob8h2 Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*TP*GP*AP*CP*GP*CP*CP*GP*GP*CP*GP*TP*CP*AP*TP*GP*AP*CP*AP*CP*G)-3') U 21 Synthetic construct
DNA (5'-D(*CP*GP*TP*GP*TP*AP*AP*TP*GP*AP*CP*GP*CP*CP*GP*GP*CP*GP*TP*CP*A)-3') W 21 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, B, C, D PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.220
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 68.30 α = 90.00
b = 103.70 β = 101.30
c = 104.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-11-28
  • Released Date: 2017-04-19
  • Deposition author(s): Schumacher, M.A.

Revision History

No revisions since initial release