5TX7

Crystal structure of D-isomer specific 2-hydroxyacid dehydrogenase from Desulfovibrio vulgaris

Structural Biology Knowledgebase: 5TX7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 5TX7

Classification: OXIDOREDUCTASE

Total Structure Weight: 70694.41

Macromolecule Entities
Molecule Chains Length Organism Details
D-isomer specific 2-hydroxyacid dehydrogenase family protein A, B 327 Desulfovibrio vulgaris EC#: 1.1.1 IUBMB
Gene Name(s): DVU_1412
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PGE
Query on PGE

B TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A, B DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 91.11 α = 90.00
b = 117.11 β = 90.00
c = 135.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-11-15
  • Released Date: 2016-12-07
  • Deposition author(s): Czub, M.P., Shabalin, I.G., Gasiorowska, O.A., Handing, K.B., Kutner, J., Cymborowski, M.T., Hennig, P.M., Bonanno, J., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

Revision History

  • 2017-01-25
    Type: Citation | Details: Citation
  • 2017-01-25
    Type: Entry authorship | Details: Entry authorship