5TX6

Structure of TGF-beta2 derivative with deletion of residues 52-71 and 10 single amino acid mutations (mmTGF-beta2-7M)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.213

Literature

Macromolecules
Sequence Display for 5TX6

Classification: CYTOKINE

Total Structure Weight: 31937.21

Macromolecule Entities
Molecule Chains Length Organism Details
Transforming growth factor beta-2 A, B, C 93 Mus musculus Fragment: UNP residues 303-414
Mutation: K25R, R26K, ΔL353, ΔW354, ΔS355, ΔS356, ΔD357, ΔT358, ΔQ359, ΔH360, ΔT361, ΔK362, ΔV363, ΔL364, ΔS365, ΔL366, ΔY367, ΔN368, ΔT369, ΔI370, ΔN371, ΔP372, E71R, A74K, C77S, L89V, I92V, N94R, T95K, I98V
Details: Residues 52-71 were deleted.
Gene Name(s): Tgfb2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.213
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 81.74 α = 90.00
b = 81.74 β = 90.00
c = 80.93 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-11-15
  • Released Date: 2017-03-01
  • Deposition author(s): Petrunak, E.M., Hinck, A.P.

Revision History

  • Version 1_0: 2017-03-01

    Type: Initial release

  • Version 1_1: 2017-03-08

    Type: Database references

  • Version 1_2: 2017-05-10

    Type: Database references

  • Version 1_3: 2017-09-27

    Type: Author supporting evidence