5TF6

Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 5TF6

Classification: RNA BINDING PROTEIN / RNA

Total Structure Weight: 133629.00


Macromolecule Entities
Molecule Chains Length Organism Details
U4/U6 snRNA-associated-splicing factor PRP24 A, C 374 Saccharomyces cerevisiae Fragment: UNP residues 34-400
Gene Name(s): PRP24 YMR268C YM8156.10C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
U6 snRNA B, D 72 Saccharomyces cerevisiae

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B, C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A, B, C, D POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.185
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 76.92 α = 90.00
b = 84.45 β = 90.00
c = 255.14 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-09-24
  • Released Date: 2017-01-11
  • Deposition author(s): Montemayor, E.J., Brow, D.A., Butcher, S.E.

Revision History

  • 2017-01-18
    Type: Database references