5TDK

RNA decamer duplex with eight 2'-5'-linkages

Structural Biology Knowledgebase: 5TDK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.43 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.168

Literature

Macromolecules
Sequence Display for 5TDK

Classification: RNA

Total Structure Weight: 6852.06

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') A, B 10 Unidentified

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SR
Query on SR

A, B STRONTIUM ION
Sr
PWYYWQHXAPXYMF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.43 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.168
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 24.82 α = 90.00
b = 47.02 β = 96.52
c = 42.88 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2016-09-19
  • Released Date: 2017-01-11
  • Deposition author(s): Luo, Z., Sheng, J.

Revision History

No revisions since initial release