5T5K

Structure of histone-based chromatin in Archaea


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.0 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 5T5K

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 102025.84


Macromolecule Entities
Molecule Chains Length Organism Details
DNA-binding protein HMf-2 A, B, C..., D, E, FA, B, C, D, E, F 69 Methanothermus fervidus Gene Name(s): hmfB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (90-MER) I 90 Synthetic construct
DNA (90-MER) J 90 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CAC
Query on CAC

B, D, F CACODYLATE ION
dimethylarsinate (Synonym)
C2 H6 As O2
OGGXGZAMXPVRFZ-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.0 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.214
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 99.45 α = 90.00
b = 99.45 β = 90.00
c = 171.73 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2016-08-31
  • Released Date: 2017-08-23
  • Deposition author(s): Bhattacharyya, S., Mattiroli, F., Dyer, P.N., Sandman, K., Reeve, J.N., Luger, K.

Revision History

  • Version 1_0: 2017-08-23

    Type: Initial release